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Creators/Authors contains: "Dumarieh, Rania"

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  1. Abstract

    Protein regions which are intrinsically disordered, exist as an ensemble of rapidly interconverting structures. Cooling proteins to cryogenic temperatures for dynamic nuclear polarization (DNP) magic angle spinning (MAS) NMR studies suspends most of the motions, resulting in peaks that are broad but not featureless. To demonstrate that detailed conformational restraints can be retrieved from the peak shapes of frozen proteins alone, we developed and used a simulation framework to assign peak features to conformers in the ensemble. We validated our simulations by comparing them to spectra of α‐synuclein acquired under different experimental conditions. Our assignments of peaks to discrete dihedral angle populations suggest that structural constraints are attainable under cryogenic conditions. The ability to infer ensemble populations from peak shapes has important implications for DNP MAS NMR studies of proteins with regions of disorder in living cells because chemical shifts are the most accessible measured parameter.

     
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  2. The dehaloperoxidase isoenzymes A and B (DHP A and B) are among the most versatile hemoproteins. The DHP A (V59W) mutant demonstrates robust peroxidase activity at pH 5 but complete loss of activity at pH 7, revealing a new inhibition mechanism in the multifunctional catalytic hemoglobins. 
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